Stem-loop sequence aga-mir-2-1

Accession

MI0001621 (change log)

Previous IDs

aga-mir-2b

Description

Anopheles gambiae miR-2-1 stem-loop

Gene family

MIPF0000049; mir-2

Literature search

2 open access papers mention aga-mir-2-1
(14 sentences)

Stem-loop

   gcau u    u   -      -         a    ugcacuu     
5'     g ccug cuc ucaaag uggcuguga augg       ucga 
       | |||| ||| |||||| ||||||||| ||||       ||| u
3'     c ggau gag aguuuc accgacacu uacu       agcc 
   ---g c    c   u      g         a    ---cuau     

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AgamP3; GCA_000005575.1): chr2L: 37757103-37757189 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aga-mir-2-1

• aga-mir-2-2: chr2L: 37758699-37758796 [-]
• aga-mir-2c: chr2L: 37758085-37758193 [-]
• aga-mir-13b: chr2L: 37757564-37757657 [-]
• aga-mir-2b: chr2L: 37757412-37757490 [-]
• aga-mir-2-1: chr2L: 37757103-37757189 [-]

Database links

• miRBase Tracker:MI0001621

Mature sequence aga-miR-2

• Accession: MIMAT0009202
• Sequence: 58 - uaucacagccagcuuugaugagc - 80
• Evidence: by similarity; MI0000431

References

1. " Griffiths-Jones S Unpublished (2009).