miRBase entry: rno-mir-429

Stem-loop rno-mir-429


Accession
MI0001643
Description
Rattus norvegicus rno-mir-429 precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
18 open access papers mention rno-mir-429
(43 sentences)

Sequence

562212 reads, 666 reads per million, 456 experiments
ugccugcugauggaugucuuaccagacaugguuagaucuggauguaucugucUAAUACUGUCUGGUAAUGCCGUccauccauggc
.(((....((((((((.(((((((((((..(((((((..(((....))))))))))..)))))))))).).))))))))...)))

Structure
u   ugcu        u -          ug       cu   u 
 gcc    gauggaug c uuaccagaca  guuagau  gga g
 |||    |||||||| | ||||||||||  |||||||  |||  
 cgg    cuaccUGC G AAUGGUCUGU  UAAUcug  ucu u
-   -uac        C U          CA       --   a 


Annotation confidence Not enough data
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Comments
Xie et al. [1] refer to this sequence by the internal identifier MIR201. The sequence is unrelated to mouse mir-201 (MIR:MI0000244).

Genome context
chr5: 173488331-173488415 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from rno-mir-429
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-429

Accession MIMAT0001538
Description Rattus norvegicus rno-miR-429 mature miRNA
Sequence 53 - UAAUACUGUCUGGUAAUGCCGU - 74
Evidence experimental
cloned [2], Northern [2]

References

  1. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  2. PubMed ID: 15735639
    Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
    "Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
    "Nature (2005) 434:338-345