Dead hairpin entry

Stem-loop osa-MIR439d

Accession

MI0001694

Description

Oryza sativa osa-MIR439d precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention osa-MIR439d
(2 sentences)

Sequence

100021 reads, 458.0 reads per million, 142 experiments

ccaccuacccugucgaacucacguaguucgacAUGUACCUGUCGAACUGUGGUUguucgauagguaucccUGUCGAACCGCGGUUGUUCGAuagggug
.....(((((((((((((...(((.((((((((.(((((((((((((.......)))))))))))))...)))))))).)))...)))))))))))))

Structure

ccacc             uca   a        --U             UG 
     uacccugucgaac   cgu guucgacA   GUACCUGUCGAAC  U
     |||||||||||||   ||| ||||||||   |||||||||||||  G
     gugggauAGCUUG   GCG CAAGCUGU   uauggauagcuug  G
-----             UUG   C        ccc             UU