Stem-loop sequence mtr-MIR395b

Accession

MI0001747 (change log)

Description

Medicago truncatula miR395b stem-loop

Gene family

MIPF0000016; MIR395

Literature search

5 open access papers mention mtr-MIR395b
(12 sentences)

Stem-loop

   uacu         -uc   u          ug         ---    u   a a    -    a 
5'     uguugauuu   ucu ggaguuccuc  aaugcuuca   aaca gag c aucu ugau g
       |||||||||   ||| ||||||||||  |||||||||   |||| ||| | |||| ||||  
3'     acaacuaag   agg ucucaagggg  uuaugaagu   uugu cuu g uagg auua a
   --au         uua   u          gu         aac    u   - a    u    a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 16653454-16653577 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR395b

• mtr-MIR395i: chr5: 16656267-16656342 [-]
• mtr-MIR395b: chr5: 16653454-16653577 [-]

Database links

• miRBase Tracker:MI0001747

Mature sequence mtr-miR395b

• Accession: MIMAT0001649
• Sequence: 85 - augaaguauuugggggaacuc - 105
• Evidence: by similarity; MI0001043

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).