miRBase entry: mtr-MIR156a

Stem-loop mtr-MIR156a


Accession
MI0001752
Description
Medicago truncatula mtr-MIR156a precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
10 open access papers mention mtr-MIR156a
(77 sentences)

Sequence

agccaugaaucaguccgagaUGACAGAAGAGAGAGAGCACAcccaccugauuacaaguaacaaaaaacuaccaacuaucaacauuuugucuacuaugaagaaaaucacaugucuagacuauaguuacgaauggaagauacauucaaugauguuuaugaaaauuugagacggucgaggacuauaguuacucuaucgcauacauuuaaugacaaaaaaaauuguguacucuuauuuauuuucaauacaucuucauucaauuucuaugcaagaaucaaaaugcaguauaaaaaauugcauucaauaucaugguaaaaaaauuguucaaaaaaaguaaauaucaugguaaaaaaaucauuagauuuugcaauaaguaagagucaaguuuuaccuugugaggaauuccucccaacagaaucaugggagcucuuucuucuucucucauugugcccugccagucucc
..........(((..((.(((((.((((((((((((((...((((..(((((...(((........)))......(((.((((((..(((((.((((..........))))..))))).........(((((.......)))))...)))))).)))(((((((((..((((.((((((....))).))).)))).(((((..................))))).((((((((((((.........(((((((.........))).)))).....((((((((.......))))))))...((((((((((........................))))))))))..((((((....))))))..)))))))))))))))))))))...(((.((((....)))).)))...))))))))).)))))))).)))))).))))).))..))).........

Structure
agccaugaau   uc  a     C      -        ACA    cc     acaaguaacaaaaaacuaccaacuaucaacauuuugucuacuaugaagaaaaucacaugucuagacuauaguuacgaauggaagauacauucaaugauguuuaug         gacggucgaggacuauaguuacucuaucgcauacauuuaaugacaaaaaaaauugugua            uucaauacaucuucauucaauuucuaugcaagaaucaaaaugcaguauaaaaaauugcauuca 
          cag  cg gaUGA AGAAGA GAGAGAGC   ccca  ugauu                                                                                                         aaaauuuga                                                           cucuuauuuauu                                                               a
          |||  || ||||| |||||| ||||||||   ||||  |||||                                                                                                         |||||||||                                                           ||||||||||||                                                                
          guc  gu uuacu ucuucu cuuucucg   gggu  acuaa                                                                                                         uuuugaacu                                                           gagaaugaauaa                                                               u
-ccucugacc   cc  g     c      u        --a    --     -------------------------------------------------------------------------------gacaacccuccuuaaggaguguucca         -----------------------------------------------------------            cguuuuagauuacuaaaaaaaugguacuauaaaugaaaaaaacuuguuaaaaaaaugguacua 


Annotation confidence Not enough data
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Genome context
contig_50145: 402-861 [-]

Database links

Mature mtr-miR156a

Accession MIMAT0001654
Description Medicago truncatula mtr-miR156a mature miRNA
Sequence 21 - UGACAGAAGAGAGAGAGCACA - 41
Evidence experimental
454 [2], Northern [2]

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 19555436
    Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
    "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
    "New Phytol (2009) 184:85-98