miRBase entry: sof-MIR396

Stem-loop sof-MIR396


Accession
MI0001755
Description
Saccharum officinarum sof-MIR396 precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
7 open access papers mention sof-MIR396
(26 sentences)

Sequence

agauggccuucuuugugaucUUCCACAGCUUUCUUGAACUGcaucucuaagaggagcagcucgaagccucgaacucuaccugcaugagcaggugcaguucaauaaagcugugggaaacugcagagagaggccaa
...((((((((((((((...((((((((((((.(((((((((((((((...(((((.((.((((....)))).)))).))).....)).))))))))))))).))))))))))))...)))))))).)))))).

Structure
aga      -        auc            C             -  --aag   -  c  c    a 
   uggccu ucuuugug   UUCCACAGCUUU UUGAACUGcaucu cu     agg ag ag ucga g
   |||||| ||||||||   |||||||||||| ||||||||||||| ||     ||| || || ||||  
   accgga agagacgu   agggugucgaaa aacuugacgugga ga     ucc uc uc agcu c
--a      g        caa            u             c  guacg   a  -  a    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature sof-miR396

Accession MIMAT0001657
Description Saccharum officinarum sof-miR396 mature miRNA
Sequence 21 - UUCCACAGCUUUCUUGAACUG - 41
Evidence not_experimental

References

  1. PubMed ID: 15916721
    Identification and characterization of new plant microRNAs using EST analysis
    "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
    "Cell Res (2005) 15:336-360

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13