Stem-loop sof-MIR168a

Accession

MI0001763

Description

Saccharum officinarum sof-MIR168a precursor miRNA

Gene family

MIPF0000081; MIR168

Literature search

5 open access papers mention sof-MIR168a
(23 sentences)

Sequence

gccgccgcgccgccucgggcUCGCUUGGUGCAGAUCGGGACccgccgcccggccgacgggacggaucccgccuugcaccaagugaaucggagccggcgcagcca
...((.((((((.(((.((.(((((((((((((..(((((.(((...((((.....)))).))).)))))..))))))))))))).)).))).)))))).))..

Structure

gcc  c      c   g  c             AU     C   ccg    g 
   gc gcgccg cuc gg UCGCUUGGUGCAG  CGGGA ccg   cccg c
   || |||||| ||| || |||||||||||||  ||||| |||   |||| c
   cg cgcggc gag cu agugaaccacguu  gcccu ggc   gggc g
-ac  a      c   g  a             cc     a   --a    a 

Annotation confidence Not enough data

Genome context

Unknown

Mature sof-miR168a

• Accession: MIMAT0001665
• Description: Saccharum officinarum sof-miR168a mature miRNA
• Sequence: 21 - UCGCUUGGUGCAGAUCGGGAC - 41
• Evidence: not_experimental

References

1. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13