Stem-loop sequence sof-MIR408a

Accession

MI0001765 (change log)

Description

Saccharum officinarum miR408a stem-loop

Gene family

MIPF0000102; MIR408

Literature search

9 open access papers mention sof-MIR408a
(90 sentences)

Stem-loop

   agaagau     -    -u    a      u       a   u    u     cau     aaauuuccaauuucuguccuccgcuaggccgcuacugcauuucuguuugcuugcucacaaaacggagggauuugugagaguu 
5'        gggua uggu  ggag caggga gaggcag gca ggga gaggc   caaca                                                                                  a
          ||||| ||||  |||| |||||| ||||||| ||| |||| |||||   |||||                                                                                  u
3'        cccgu gcca  ccuc gucccu cuccguc cgu cccu cuucg   guugu                                                                                  c
   ---cguu     u    cc    g      u       a   c    c     -uu     ccuguggucgacucgagagucggcagaguccaguccgguaguggugaaguggucccuccguggaagaaacaagaaagacgga 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Database links

• miRBase Tracker:MI0001765

Mature sequence sof-miR408a

• Accession: MIMAT0001667
• Sequence: 244 - cugcacugccucuucccuggc - 264
• Evidence: by similarity; MI0001149

References

1. PMID:15916721 "Identification and characterization of new plant microRNAs using EST analysis" Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA Cell Res. 15:336-360(2005).
2. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).