Stem-loop sof-MIR408d

Accession

MI0001768

Description

Saccharum officinarum sof-MIR408d precursor miRNA

Gene family

MIPF0000102; MIR408

Literature search

9 open access papers mention sof-MIR408d
(90 sentences)

Sequence

ggaagguauguuugauuggagacagggacgaggcagagcaugggauggggccaucaacaaaauuuccaauuuccguuugcuugcucacaaaacgaaggugccugccucccuggugauggccugaccugagagggcugagagcucagcugguguccugguguuguugcuuccacccCUGCACUGCCUCUUCCCUGGCuccccaccguugcccuugc
....((((....((...((((.((((((.(((((((.(((.(((.(((((.((.(((((......(((....(((...(((.((((.((...(..(((((((.(((.....)))...)))...))))....)...)).))))..)))))).....)))))))).)).)))))))).))).))))))).)))))).)))).))....)))).....

Structure

-ggaa    uguu  auu    a      c       a   u   a     c  u     aaauuu   -auuu   uuu   -u    a  aaa --ga    ---   --u   u 
     ggua    ug   ggag caggga gaggcag gca ggg ugggg ca caaca      cca     ccg   gcu  gcuc ca   c    aggu   gcc   gcc c
     ||||    ||   |||| |||||| ||||||| ||| ||| ||||| || |||||      |||     |||   |||  |||| ||   |    ||||   |||   ||| c
     ccgu    ac   ccuC GUCCCU CUCCGUC CGU ccc accuu gu guugu      ggu     ggu   cga  cgag gu   g    ucca   cgg   ugg c
cguuc    ugcc  --c    G      U       A   C   -     c  u     ------   ccugu   ---   cu    a  cgg agag    guc   uag   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature sof-miR408d

• Accession: MIMAT0001670
• Description: Saccharum officinarum sof-miR408d mature miRNA
• Sequence: 176 - CUGCACUGCCUCUUCCCUGGC - 196
• Evidence: not_experimental

References

1. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13