Stem-loop sequence gma-MIR160a

Accession

MI0001774 (change log)

Previous IDs

gma-MIR160

Description

Glycine max miR160 stem-loop

Gene family

MIPF0000032; MIR160

Literature search

21 open access papers mention gma-MIR160a
(62 sentences)

Stem-loop

       c  ac     ugu      c       cu          ug     c    c  a 
5' caug au  auaug   augugc uggcucc  guaugccauu  uagag ucau ga g
   |||| ||  |||||   |||||| |||||||  ||||||||||  ||||| |||| ||  
3' guac ua  uauac   uauacg accgagg  uaugcgguag  guuuc agua cu c
       a  ca     -uu      a       ag          gu     c    a  a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr10: 44431708-44431826 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001774

Mature sequence gma-miR160a-5p

• Accession: MIMAT0001676
• Previous IDs: gma-miR160
• Sequence: 21 - ugccuggcucccuguaugcca - 41
• Evidence: experimental; 454 [1]

Mature sequence gma-miR160a-3p

• Accession: MIMAT0022889
• Sequence: 82 - gcguaugaggagccaagcaua - 102
• Evidence: experimental; Illumina [3]

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots" Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O BMC Genomics. 9:160(2008).
3. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).