Stem-loop gma-MIR398a

Accession

MI0001787

Description

Glycine max gma-MIR398a precursor miRNA

Gene family

MIPF0000107; MIR398

Literature search

15 open access papers mention gma-MIR398a
(82 sentences)

Sequence

cucggaggagugaaucugagaacacaaggcugguuugcacugcuauaucaucuauugguauaaggugaauuuacuuUGUGUUCUCAGGUCACCCCUUugagccaaccuguugacau
((((((((.((((.(((((((((((((((..(((((((.((..(((((((.....))))))))))))))))..))))))))))))))))))).))))))))...............

Structure

---------------        a    a               cu       a  gc       u 
               cucggagg guga ucugagaacacaagg  gguuugc cu  uauauca c
               |||||||| |||| |||||||||||||||  ||||||| ||  ||||||| u
               gaguUUCC CACU GGACUCUUGUGUuuc  uuaagug ga  auauggu a
uacaguuguccaacc        C    -               au       -  --       u 

Annotation confidence Not enough data

Genome context

chr1: 7214749-7214864 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR398a

Mature gma-miR398a

• Accession: MIMAT0001689
• Description: Glycine max gma-miR398a mature miRNA
• Sequence: 77 - UGUGUUCUCAGGUCACCCCUU - 97
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13