Stem-loop sequence gma-MIR398a

Accession

MI0001787 (change log)

Description

Glycine max miR398a stem-loop

Gene family

MIPF0000107; MIR398

Literature search

15 open access papers mention gma-MIR398a
(78 sentences)

Stem-loop

   ---------------        a    a               cu    ug a  gc       u 
5'                cucggagg guga ucugagaacacaagg  gguu  c cu  uauauca c
                  |||||||| |||| |||||||||||||||  ||||  | ||  ||||||| u
3'                gaguuucc cacu ggacucuuguguuuc  uuaa  g ga  auauggu a
   uacaguuguccaacc        c    -               au    gu -  --       u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr1: 7214749-7214864 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR398a

• gma-MIR398a: chr1: 7214749-7214864 [-]
• gma-MIR2119: chr1: 7214478-7214613 [-]

Database links

• miRBase Tracker:MI0001787

Mature sequence gma-miR398a

• Accession: MIMAT0001689
• Sequence: 77 - uguguucucaggucaccccuu - 97
• Evidence: by similarity; MI0001017

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).