Stem-loop sequence zma-MIR408a

Accession

MI0001846 (change log)

Previous IDs

zma-MIR408

Description

Zea mays miR408 stem-loop

Gene family

MIPF0000102; MIR408

Literature search

21 open access papers mention zma-MIR408a
(127 sentences)

Stem-loop

   --------    uugguuuu    u    a      u   a   a   u    u     cau     aaguggagggacuagcuugcgaggcagaaagaaggu 
5'         gggg        gauu ggag caggga gag cag gca ggga ggggc   caaca                                    g
           ||||        |||| |||| |||||| ||| ||| ||| |||| |||||   |||||                                    c
3'         cccc        cuag ccuc gucccu cuc guc cgu cccu ccucg   guugu                                    c
   cguugcca    --------    -    g      u   c   a   c    c     -uu     gaggguaguagcaaaguggccccuccguggccguga 

Deep sequencing

2676 reads, 2.19e+03 reads per million, 200 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr3: 58127890-58128080 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001846

Mature sequence zma-miR408a

• Accession: MIMAT0001748
• Previous IDs: zma-miR408
• Sequence: 152 - cugcacugccucuucccuggc - 172
• Deep sequencing: 817 reads, 164 experiments
• Evidence: by similarity; MI0001149
• Database links:
  • RNAcentral:URS000003D781_4577

References

1. PMID:15916721 "Identification and characterization of new plant microRNAs using EST analysis" Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA Cell Res. 15:336-360(2005).
2. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).