miRBase entry: zma-MIR408a

Stem-loop zma-MIR408a


Accession
MI0001846
Description
Zea mays zma-MIR408a precursor miRNA
Gene family
MIPF0000102; MIR408

Literature search
21 open access papers mention zma-MIR408a
(129 sentences)

Sequence

468 reads, 1422 reads per million, 13 experiments
gggguugguuuugauuuggagacagggaugagacagagcaugggauggggccaucaacaaaguggagggacuagcuugcgaggcagaaagaaggugccagugccggugccuccccggugaaacgaugaugggaguguuguugcucccucccCUGCACUGCCUCUUCCCUGGCuccgaucccccaccguugc
((((........((((.((((.((((((.(((.(((.(((.((((.(((((...(((((....(((((.(((.((..((..((((.........)))).)))).))).)))))((.((.(.....).)).))..)))))..))))).)))).))).))).))).)))))).))))))))))))........

Structure
--------    uugguuuu    u    a      u   a   a   u    u     cau     -----------------aagu     g   a  uu  ga    gaa 
        gggg        gauu ggag caggga gag cag gca ggga ggggc   caaca                     ggagg acu gc  gc  ggca   a
        ||||        |||| |||| |||||| ||| ||| ||| |||| |||||   |||||                     ||||| ||| ||  ||  ||||   g
        cccc        cuag ccuC GUCCCU CUC GUC CGU cccu ccucg   guugu                     ccucc ugg cg  ug  ccgu   a
cguugcca    --------    -    G      U   C   A   C    c     -uu     gaggguaguagcaaaguggcc     g   c  --  -a    gga 


Annotation confidence Not enough data
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Genome context
chr3: 58127890-58128080 [-]

Database links

Mature zma-miR408a

Accession MIMAT0001748
Description Zea mays zma-miR408a mature miRNA
Sequence 152 - CUGCACUGCCUCUUCCCUGGC - 172
Evidence not_experimental
Database links

References

  1. PubMed ID: 15916721
    Identification and characterization of new plant microRNAs using EST analysis
    "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
    "Cell Res (2005) 15:336-360

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13