Stem-loop sequence sbi-MIR395f

Accession

MI0001855 (change log)

Description

Sorghum bicolor miR395f stem-loop

Gene family

MIPF0000016; MIR395

Literature search

5 open access papers mention sbi-MIR395f
(34 sentences)

Stem-loop

   aca     u          c         u             ag     ----a       a 
5'    auguu gguguuacca gaguucccu caagcacuucaug  gcacc     uuaaaua c
      ||||| |||||||||| ||||||||| |||||||||||||  |||||     |||||||  
3'    uacaa ucauaguggu cucaagggg guuugugaaguau  ugugg     aauuuau u
   -gc     c          u         -             aa     auuag       c 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr6: 57228009-57228130 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sbi-MIR395f

• sbi-MIR395e: chr6: 57228710-57228814 [-]
• sbi-MIR395d: chr6: 57228519-57228621 [-]
• sbi-MIR395c: chr6: 57228201-57228273 [-]
• sbi-MIR395f: chr6: 57228009-57228130 [-]

Database links

• miRBase Tracker:MI0001855

Mature sequence sbi-miR395f

• Accession: MIMAT0001757
• Sequence: 83 - augaaguguuugggggaacuc - 103
• Evidence: by similarity; MI0001536

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).