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miRBase |
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Stem-loop sequence dre-mir-17a-1 |
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Accession | MI0001897 (change log) | |||||||||||||
Description | Danio rerio miR-17a-1 stem-loop | |||||||||||||
Gene family | MIPF0000001; mir-17 | |||||||||||||
Literature search |
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20 open access papers mention dre-mir-17a-1 | |||||||||||||
Stem-loop |
cuuu a u cuu ---u - -ca a g g - a 5' gga cuug g gga gguugg gucaa uguauugu aagugcuu ca ugcag uag uauu u ||| |||| | ||| |||||| ||||| |||||||| |||||||| || ||||| ||| |||| 3' ccu ggac c ccu ccaauu caguu acauaacg uucacgga gu acguc auc auaa g --ac - u --u uuac c auc g g - u g |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence dre-miR-17a-5p |
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Accession | MIMAT0001777 |
Previous IDs | dre-miR-17a |
Sequence |
41 - caaagugcuuacagugcaggua - 62 |
Deep sequencing | 64667 reads, 11 experiments |
Evidence | experimental; cloned [1] |
Database links |
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Predicted targets |
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Mature sequence dre-miR-17a-3p |
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Accession | MIMAT0003396 |
Previous IDs | dre-miR-17a* |
Sequence |
79 - acugcaguggaggcacuucuag - 100 |
Deep sequencing | 1079 reads, 11 experiments |
Evidence | experimental; cloned [1] |
Database links |
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References |
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1 |
PMID:15937218
"The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
Genes Dev. 19:1288-1293(2005).
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