Stem-loop sequence dre-mir-18a

Accession

MI0001900 (change log)

Description

Danio rerio miR-18a stem-loop

Gene family

MIPF0000001; mir-17

Literature search

5 open access papers mention dre-mir-18a
(6 sentences)

Stem-loop

   gg          --   u   uc   u    a   -  -a  u 
5'   cuuugugcua  agg gca  uag gcag uag ug  ag a
     ||||||||||  ||| |||  ||| |||| ||| ||  ||  
3'   ggagcacggu  ucc cgu  auc cguc auc ac  uc g
   ug          cu   u   ga   c    -   c  ga  a 

Deep sequencing

5123 reads, 209 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr1: 3298006-3298088 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-18a

• dre-mir-17a-1: chr1: 3298112-3298249 [-]
• dre-mir-18a: chr1: 3298006-3298088 [-]
• dre-mir-19a: chr1: 3297848-3297936 [-]
• dre-mir-20a: chr1: 3297603-3297755 [-]
• dre-mir-19b: chr1: 3297484-3297570 [-]
• dre-mir-92a-1: chr1: 3297367-3297451 [-]

Database links

• EntrezGene:mir18a
• EntrezGene:mir18a
• RNAcentral:URS000075C212_7955
• miRBase Tracker:MI0001900

Mature sequence dre-miR-18a

• Accession: MIMAT0001779
• Sequence: 11 - uaaggugcaucuagugcagaua - 32
• Deep sequencing: 4917 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00000A05D9_7955
• Predicted targets:
  • TargetScanFish:dre-miR-18a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).