Stem-loop sequence dre-mir-18b

Accession

MI0001901 (change log)

Description

Danio rerio miR-18b stem-loop

Gene family

MIPF0000001; mir-17

Literature search

2 open access papers mention dre-mir-18b
(2 sentences)

Stem-loop

   ua  g         --   u        u    a   -  aaau 
5'   cu cuuaugcua  agg gcauuuag gcag uag ug    a
     || |||||||||  ||| |||||||| |||| ||| ||    g
3'   gg gaauacggu  ucc cgugaauc cguc auc ac    a
   uc  g         cu   c        c    -   c  gauc 

Deep sequencing

4823 reads, 209 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr9: 53436831-53436917 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-18b

• dre-mir-17a-2: chr9: 53436944-53437026 [-]
• dre-mir-18b: chr9: 53436831-53436917 [-]
• dre-mir-92a-2: chr9: 53436280-53436374 [-]

Database links

• EntrezGene:mir18b
• EntrezGene:mir18b
• RNAcentral:URS0000759CF6_7955
• miRBase Tracker:MI0001901

Mature sequence dre-miR-18b-5p

• Accession: MIMAT0001780
• Previous IDs: dre-miR-18b
• Sequence: 13 - uaaggugcauuuagugcagaua - 34
• Deep sequencing: 4627 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075F10D_7955
• Predicted targets:
  • TargetScanFish:dre-miR-18b

Mature sequence dre-miR-18b-3p

• Accession: MIMAT0003397
• Previous IDs: dre-miR-18b*
• Sequence: 55 - cugcccuaagugccccuucugg - 76
• Deep sequencing: 66 reads, 9 experiments
• Evidence: experimental; cloned [1]

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).