Stem-loop dre-mir-18b

Accession

MI0001901

Description

Danio rerio dre-mir-18b precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

2 open access papers mention dre-mir-18b
(2 sentences)

Sequence

1155 reads, 158 reads per million, 11 experiments

uacugcuuaugcUAAGGUGCAUUUAGUGCAGAUAgugaaauagacuagcaccuaCUGCCCUAAGUGCCCCUUCUGGcauaaggggcu
..((.((((((((((((.((((((((.((((.(((((...........)).))))))).)))))))).)))..))))))))).))..

Structure

ua  g         --   U        U    A   -  aaau 
  cu cuuaugcUA  AGG GCAUUUAG GCAG UAg ug    a
  || |||||||||  ||| |||||||| |||| ||| ||    g
  gg gaauacGGU  UCC CGUGAAUC CGUC auc ac    a
uc  g         CU   C        C    -   c  gauc 

Annotation confidence Not enough data

Genome context

chr9: 53436831-53436917 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-18b

Mature dre-miR-18b-5p

• Accession: MIMAT0001780
• Description: Danio rerio dre-miR-18b-5p mature miRNA
• Sequence: 13 - UAAGGUGCAUUUAGUGCAGAUA - 34
• Evidence: experimental ; cloned [1]

Mature dre-miR-18b-3p

• Accession: MIMAT0003397
• Description: Danio rerio dre-miR-18b-3p mature miRNA
• Sequence: 55 - CUGCCCUAAGUGCCCCUUCUGG - 76
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293