Stem-loop sequence dre-mir-26a-1

Accession

MI0001923 (change log)

Description

Danio rerio miR-26a-1 stem-loop

Gene family

MIPF0000043; mir-26

Literature search

9 open access papers mention dre-mir-26a-1
(117 sentences)

Stem-loop

   uuugg     uu     a    a          -g  a 
5'      ccugg  caagu aucc ggauaggcuu  ug u
        |||||  ||||| |||| ||||||||||  || g
3'      ggacu  guuca uagg cuuauccgaa  gc u
   aguaa     ug     g    g          ag  c 

Deep sequencing

277279 reads, 1.65e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr9: 41733533-41733610 [+]
• Overlapping transcripts:

  sense

  OTTDART00000027578 ; ctdsp1-001; intron 4

  ENSDART00000100226 ; ctdsp1-001; intron 4

Database links

• EntrezGene:mir26a-1
• EntrezGene:mir26a-1
• RNAcentral:URS000075CD06_7955
• miRBase Tracker:MI0001923

Mature sequence dre-miR-26a-5p

• Accession: MIMAT0001794
• Previous IDs: dre-miR-26a
• Sequence: 11 - uucaaguaauccaggauaggcu - 32
• Deep sequencing: 827647 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000019B0F7_7955
• Predicted targets:
  • TargetScanFish:dre-miR-26a

Mature sequence dre-miR-26a-3p

• Accession: MIMAT0031947
• Sequence: 49 - ccuauucgggaugacuugguuc - 70
• Deep sequencing: 359 reads, 11 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00007717C4_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).