Stem-loop dre-mir-101a

Accession

MI0001960

Description

Danio rerio dre-mir-101a precursor miRNA

Gene family

MIPF0000046; mir-101

Literature search

7 open access papers mention dre-mir-101a
(10 sentences)

Sequence

8373 reads, 709 reads per million, 11 experiments

ggcugcccugguucaguuaucacagugcugaugcuguccaucuuaaaggUACAGUACUGUGAUAACUGAAGgauggcugcc
(((.(((....(((((((((((((((((((.((((............)))))))))))))))))))))))....))).)))

Structure

   u   cugg                   a    gucca 
ggc gcc    uucaguuaucacagugcug ugcu     u
||| |||    ||||||||||||||||||| ||||      
ccg cgg    AAGUCAAUAGUGUCAUGAC AUgg     c
   u   uagG                   -    aaauu 

Annotation confidence High

Genome context

chr6: 31365446-31365526 [+]

Mature dre-miR-101a

• Accession: MIMAT0001814
• Description: Danio rerio dre-miR-101a mature miRNA
• Sequence: 50 - UACAGUACUGUGAUAACUGAAG - 71
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293