Stem-loop dre-mir-107a

Accession

MI0001963

Description

Danio rerio dre-mir-107a precursor miRNA

Gene family

MIPF0000024; mir-103

Literature search

5 open access papers mention dre-mir-107a
(11 sentences)

Sequence

6693 reads, 334 reads per million, 11 experiments

ucugugugcucugAGCUUCUUUACAGUGUUGUCUUGuggcauggagaucaAGCAGCAUUGUACAGGGCUAUCAcagcacacugaacagc
((.(((((((.((((((.((.((((((((((.((((............)))))))))))))).)))))..))).))))))).)).....

Structure

-----  u       c   --   U  U          U    uggca 
     uc gugugcu ugA  GCU CU UACAGUGUUG CUUG     u
     || ||||||| |||  ||| || |||||||||| ||||      
     ag cacacga ACU  CGG GA AUGUUACGAC GAac     g
cgaca  u       c   AU   -  C          -    uagag 

Annotation confidence High

Genome context

chr12: 16960693-16960781 [+]

Mature dre-miR-107a-3p

• Accession: MIMAT0001817
• Description: Danio rerio dre-miR-107a-3p mature miRNA
• Sequence: 51 - AGCAGCAUUGUACAGGGCUAUCA - 73
• Evidence: not_experimental

Mature dre-miR-107a-5p

• Accession: MIMAT0031959
• Description: Danio rerio dre-miR-107a-5p mature miRNA
• Sequence: 14 - AGCUUCUUUACAGUGUUGUCUUG - 36
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293