Stem-loop sequence dre-mir-200b

Accession

MI0002038 (change log)

Description

Danio rerio miR-200b stem-loop

Gene family

MIPF0000019; mir-8

Literature search

17 open access papers mention dre-mir-200b
(268 sentences)

Stem-loop

         c   uc    -    g      c      uuuca 
5' gguagu guc  cauc uuac aggcag auugga     u
   |||||| |||  |||| |||| |||||| ||||||     u
3' ccgucg uag  guag aaug uccguc uaaucu     a
         u   ua    u    g      a      uuuuc 

Deep sequencing

41769 reads, 1.98e+04 reads per million, 12 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr23: 24072029-24072110 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-200b

• dre-mir-200b: chr23: 24072029-24072110 [+]
• dre-mir-200a: chr23: 24072160-24072245 [+]
• dre-mir-429a: chr23: 24073815-24073896 [+]
• dre-mir-7149: chr23: 24074083-24074155 [+]

Database links

• EntrezGene:mir200b
• EntrezGene:mir200b
• RNAcentral:URS000075E7D7_7955
• miRBase Tracker:MI0002038

Mature sequence dre-miR-200b-5p

• Accession: MIMAT0031985
• Sequence: 13 - caucuuacgaggcagcauugga - 34
• Deep sequencing: 403 reads, 11 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00007877A7_7955

Mature sequence dre-miR-200b-3p

• Accession: MIMAT0001862
• Previous IDs: dre-miR-200b
• Sequence: 50 - uaauacugccugguaaugauga - 71
• Deep sequencing: 41365 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000014D9C1_7955
• Predicted targets:
  • TargetScanFish:dre-miR-200b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).