Stem-loop sequence ptc-MIR159b

AccessionMI0002196 (change log)
DescriptionPopulus trichocarpa miR159b stem-loop
Gene family MIPF0000010; MIR159
Literature search

9 open access papers mention ptc-MIR159b
(49 sentences)

Stem-loop 
   gauuau  ag           ga       u     c  cu  --       auc     g     c    aauc  a   c       ccauc 
5'       gg  uggagcuccuu  aguccaa agaag uc  gc  uggguag   gagcu cugag uaug    cc cag ccuauca     a
         ||  |||||||||||  ||||||| ||||| ||  ||  |||||||   ||||| ||||| ||||    || ||| |||||||     g
3'       cc  aucucgaggga  uuagguu uuuuc ag  ug  auccauu   uucga gacuc auac    gg guc ggguagu     u
   -aguuu  aa           ag       u     u  au  ua       -au     g     u    guuc  c   c       uuuac
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000351.2: 4261680-4261866 [+]
intergenic
Database links

Mature sequence ptc-miR159b

Accession MIMAT0001902
Sequence

158 -  

uuuggauugaagggagcucua

 - 178

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Evidence experimental; cloned [1]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).