Stem-loop ptc-MIR160f

Accession

MI0002206

Description

Populus trichocarpa ptc-MIR160f precursor miRNA

Literature search

6 open access papers mention ptc-MIR160f
(22 sentences)

Sequence

aagaauggucUGCCUGGCUCCCUGAAUGCCAucuaggaagcuugucaaagaguguuggcaaccucucuaacuggcaugaggggagucacgcaggcccaac
......(((((((.(((((((((..((((((..((((.((.(((((((......))))))).)).))))..))))))..))))))))).)))))))....

Structure

aagaau       C         GA      uc    a  c       ag 
      ggucUGC UGGCUCCCU  AUGCCA  uagg ag uugucaa  a
      ||||||| |||||||||  ||||||  |||| || |||||||   
      ccggacg acugagggg  uacggu  aucu uc aacgguu  g
--caac       c         ag      ca    c  c       gu 

Annotation confidence Low

Genome context

CM000352.2: 120174-120273 [+]

Mature ptc-miR160f

• Accession: MIMAT0001912
• Description: Populus trichocarpa ptc-miR160f mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGAAUGCCA - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203