Stem-loop sequence ptc-MIR166j

AccessionMI0002227 (change log)
DescriptionPopulus trichocarpa miR166j stem-loop
Gene family MIPF0000004; MIR166
Literature search

6 open access papers mention ptc-MIR166j
(23 sentences)

Stem-loop 
   ucuuuu   a        uu      cu   g      ---u   uc        -  --uc  -   --u    c 
5'       uug ggggaaug  gucugg  cga gacuuu    ugu  aucaaucu aa    ga acu   ucua c
         ||| ||||||||  ||||||  ||| ||||||    |||  |||||||| ||    || |||   ||||  
3'       aac ccccuuac  cggacc  gcu uuggga    gca  uaguuaga uu    cu uga   agau u
   -uuacu   c        uu      ag   g      uuau   -c        a  uauu  a   ucu    g
Get sequence
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000350.2: 7398187-7398329 [+]
intergenic
Database links

Mature sequence ptc-miR166j

Accession MIMAT0001933
Sequence

114 -  

ucggaccaggcuucauucccc

 - 134

Get sequence
Evidence by similarity; MI0000204

References

1
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).