Stem-loop sequence ptc-MIR166n

AccessionMI0002231 (change log)
DescriptionPopulus trichocarpa miR166n stem-loop
Gene family MIPF0000004; MIR166
Literature search

6 open access papers mention ptc-MIR166n
(23 sentences)

Stem-loop 
   aa       uu             a   a     ----cu  --ucuc   cguuaacuuagucucuguuaccguuagguauucauuacugaguguauuugcagcccccuugucugauuuuagcaucaugagaguaggaagugcuggugaucauaggguuugguucaa 
5'   ggggugu  ggaaugaaguuug ucc agauc      ug      ucc                                                                                                                     g
     |||||||  ||||||||||||| ||| |||||      ||      |||                                                                                                                      
3'   uuccaca  ccuuacuucggac agg ucuag      ac      agg                                                                                                                     a
   -g       uu             c   c     uaaaau  uauaaa   uuuauauuaaugaacguucuaguuuggauuuuuaauuguucuucauucccuauuaauucugaugaugucuaauggucgauccuguguccucucuauauuucucuucucaguuuaccu
Get sequence
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000355.2: 5666163-5666493 [-]
intergenic
Database links

Mature sequence ptc-miR166n

Accession MIMAT0001937
Sequence

303 -  

ucggaccaggcuucauuccuu

 - 323

Get sequence
Evidence by similarity; MI0000203

References

1
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).