Stem-loop sequence ptc-MIR166o

AccessionMI0002232 (change log)
DescriptionPopulus trichocarpa miR166o stem-loop
Gene family MIPF0000004; MIR166
Literature search

6 open access papers mention ptc-MIR166o
(23 sentences)

Stem-loop 
   aagggguguuuggaaugaaguuugauccaagauccuugucucucccguucauuuaguaauguuacugcuagguuucgcuauguauugaucaguguauacacagcagcuacgagcuaggccuuguguuucagauuuuagcuucaauauagagugagagugauagaguuuga    a   -ccau  cau     c     a  -uuu    uuuuuaaucauaucccuacuu    uua 
5'                                                                                                                                                                           uuca gau     cu   gugug uagcu gc    uaaa                     ccug   a
                                                                                                                                                                             |||| |||     ||   ||||| ||||| ||    ||||                     ||||    
3'                                                                                                                                                                           aagu cua     ga   uauau auuga cg    auuu                     ggau   u
   ---------------------------------------------------------------------------------------------------------------------------------------aagccacauuccuuacuucggaccaggcucuaguc    a   caaau  -uu     u     a  uucu    --------------------u    ucu
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000349.2: 3705072-3705391 [+]
intergenic
Database links

Mature sequence ptc-miR166o

Accession MIMAT0001938
Sequence

292 -  

ucggaccaggcuucauuccuu

 - 312

Get sequence
Evidence by similarity; MI0000206

References

1
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).