Stem-loop sequence ptc-MIR169m

AccessionMI0002263 (change log)
DescriptionPopulus trichocarpa miR169m stem-loop
Gene family MIPF0000012; MIR169_1
Literature search

9 open access papers mention ptc-MIR169m
(18 sentences)

Stem-loop 
   ucu    u   -         u    u     -cu   uuca   a      au  a  g  g 
5'    uguu ggu agccaagga gacu gccug   ccc    agg gguuuc  ga au ca a
      |||| ||| ||||||||| |||| |||||   |||    ||| ||||||  || || ||  
3'    acag uca ucgguuccu cugg cggac   ggg    ucc ccaaag  cu ua gu c
   --g    u   a         -    -     uuu   -uug   -      cu  c  -  a
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000353.2: 7526473-7526591 [-]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR169m
ptc-MIR169mCM000353.2: 7526473-7526591 [-]
ptc-MIR169lCM000353.2: 7526169-7526311 [-]
Database links

Mature sequence ptc-miR169m

Accession MIMAT0001969
Sequence

11 -  

uagccaaggaugacuugccug

 - 31

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Evidence by similarity; MI0000976

References

1
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).