Stem-loop sequence ptc-MIR169w

Accession

MI0002273 (change log)

Description

Populus trichocarpa miR169w stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

9 open access papers mention ptc-MIR169w
(12 sentences)

Stem-loop

   cguguuug          a     u     -cu  au  a   a      -aa  a 
5'         guagccaagg ugacu gccca   cu  gg aag guucuc   gc c
           |||||||||| ||||| |||||   ||  || ||| ||||||   || a
3'         uaucgguucc acuga cgggu   gg  uc uuc caggag   cg c
   --cagucg          -     -     cuc  cu  a   c      aga  g 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000337.2: 27741955-27742063 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR169w

• ptc-MIR169q: CM000337.2: 27741711-27741825 [+]
• ptc-MIR169w: CM000337.2: 27741955-27742063 [+]

Database links

• miRBase Tracker:MI0002273

Mature sequence ptc-miR169w

• Accession: MIMAT0001979
• Sequence: 10 - uagccaaggaugacuugccca - 30
• Evidence: by similarity; MI0000212

References

1. PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).