Stem-loop sequence ptc-MIR172f

AccessionMI0002292 (change log)
DescriptionPopulus trichocarpa miR172f stem-loop
Gene family MIPF0000035; MIR172
Literature search

8 open access papers mention ptc-MIR172f
(33 sentences)

Stem-loop 
   uugu    g     u      c        a   --g    -u  -a    c      --auau uu    ----         a 
5'     uugc ggugc gcauca caagauuc cau   caaa  gc  uggc gaugau      g  agaa    auuuuuuuu u
       |||| ||||| |||||| |||||||| |||   ||||  ||  |||| ||||||      |  ||||    |||||||||  
3'     aacg cuacg cguagu guucuaag gug   guuu  ug  accg cuacua      c  ucuu    uagaaaaaa a
   -aau    g     u      a        a   aag    cu  aa    u      gucuuu uu    ucua         u
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000340.2: 21285184-21285344 [+]
intergenic
Database links

Mature sequence ptc-miR172f

Accession MIMAT0001998
Sequence

132 -  

agaaucuugaugaugcugcau

 - 152

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Evidence by similarity; MI0000215

References

1
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).