Stem-loop sequence ptc-MIR390d

AccessionMI0002308 (change log)
DescriptionPopulus trichocarpa miR390d stem-loop
Gene family MIPF0000101; MIR390
Literature search

4 open access papers mention ptc-MIR390d
(13 sentences)

Stem-loop 
   ag    u  u          g          -  aag    ac  ug    cuuu 
5'   aauc gu aagcucagga ggauagcgcc cu   gaua  ca  ggcu    u
     |||| || |||||||||| |||||||||| ||   ||||  ||  ||||     
3'   uugg ca uuugaguccu ccuaucgcgg ga   cuau  gu  uugg    u
   --    u  u          a          u  ---    ca  uu    uuua
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000352.2: 12564435-12564540 [+]
intergenic
Database links

Mature sequence ptc-miR390d-5p

Accession MIMAT0002014
Previous IDsptc-miR390d
Sequence

11 -  

aagcucaggagggauagcgcc

 - 31

Get sequence
Evidence experimental; miRNAseq [2]

Mature sequence ptc-miR390d-3p

Accession MIMAT0022907
Sequence

80 -  

cgcuauccauccugaguuuua

 - 100

Get sequence
Evidence experimental; miRNAseq [2]

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).
2
PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).