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miRBase |
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Stem-loop sequence ptc-MIR393a |
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Accession | MI0002309 (change log) | ||||
Description | Populus trichocarpa miR393a stem-loop | ||||
Gene family | MIPF0000083; MIR393 | ||||
Literature search |
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4 open access papers mention ptc-MIR393a | ||||
Stem-loop |
ag c c u c guc u 5' aggagg auccaaagggau gcau gaucc aagu ug c |||||| |||||||||||| |||| ||||| |||| || c 3' uccucc uagguuucccua cgua cuagg uuua ac c -- u u - u -au c |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence ptc-miR393a-5p |
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Accession | MIMAT0002015 |
Previous IDs | ptc-miR393a |
Sequence |
11 - uccaaagggaucgcauugauc - 31 |
Evidence | experimental; miRNAseq [2] |
Mature sequence ptc-miR393a-3p |
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Accession | MIMAT0022908 |
Sequence |
59 - aucaugcuaucccuuuggauu - 79 |
Evidence | experimental; miRNAseq [2] |
References |
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1 |
PMID:16973872
"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
Science. 313:1596-1604(2006).
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2 |
PMID:22442676
"Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets"
PLoS One. 7:e33034(2012).
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