Stem-loop sequence ptc-MIR393a

Accession

MI0002309 (change log)

Description

Populus trichocarpa miR393a stem-loop

Gene family

MIPF0000083; MIR393

Literature search

4 open access papers mention ptc-MIR393a
(12 sentences)

Stem-loop

   ag      c            c    u     c    guc  u 
5'   aggagg auccaaagggau gcau gaucc aagu   ug c
     |||||| |||||||||||| |||| ||||| ||||   || c
3'   uccucc uagguuucccua cgua cuagg uuua   ac c
   --      u            u    -     u    -au  c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000344.2: 3747076-3747160 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00007B8B78_3694
• miRBase Tracker:MI0002309

Mature sequence ptc-miR393a-5p

• Accession: MIMAT0002015
• Previous IDs: ptc-miR393a
• Sequence: 11 - uccaaagggaucgcauugauc - 31
• Evidence: experimental; miRNAseq [2]

Mature sequence ptc-miR393a-3p

• Accession: MIMAT0022908
• Sequence: 59 - aucaugcuaucccuuuggauu - 79
• Evidence: experimental; miRNAseq [2]

References

1. PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).
2. PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).