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miRBase |
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Stem-loop sequence ptc-MIR396d |
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Accession | MI0002328 (change log) | |||||
Description | Populus trichocarpa miR396d stem-loop | |||||
Gene family | MIPF0000047; MIR396 | |||||
Literature search |
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6 open access papers mention ptc-MIR396d | |||||
Stem-loop |
---- c a a cu cca uaa u -gu gauc a 5' gaaaguccug gucaug uuuuccac gcuuucuuga cuuc ug ugcu cu gu guguguaua acuauau u |||||||||| |||||| |||||||| |||||||||| |||| || |||| || || ||||||||| ||||||| 3' uuuuuaggac cgguac agagggug cgaaagaacu gaag ac acga ga cg uacacauau ugauaug c ucaa a c c uu --c -uc u auu ---- u |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence ptc-miR396d |
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Accession | MIMAT0002034 |
Sequence |
20 - uuccacagcuuucuugaacuu - 40 |
Evidence | by similarity; MI0001014 |
References |
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1 |
"Conservation and divergence of microRNA families in plants"
http://genomebiology.com/2005/6/11/p13 (2005).
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2 |
PMID:16973872
"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
Science. 313:1596-1604(2006).
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