Stem-loop sequence ptc-MIR397a

AccessionMI0002332 (change log)
DescriptionPopulus trichocarpa miR397a stem-loop
Gene family MIPF0000120; MIR397
Literature search

4 open access papers mention ptc-MIR397a
(5 sentences)

Stem-loop 
   ug     c   c                a      -ccu    uuugugcuauuaaacug 
5'   gagaa cau auugagugcagcguug ugaaau    ccau                 u
     ||||| ||| |||||||||||||||| ||||||    ||||                 u
3'   cuuuu gua uaacuuacgucgcgac acuuua    ggua                 a
   --     u   c                c      cuac    cgggguauuucccaacc
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000347.2: 4146730-4146849 [+]
intergenic
Database links

Mature sequence ptc-miR397a

Accession MIMAT0002038
Sequence

11 -  

ucauugagugcagcguugaug

 - 31

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Evidence by similarity; MI0001015

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).