Stem-loop sequence ptc-MIR399a

AccessionMI0002338 (change log)
DescriptionPopulus trichocarpa miR399a stem-loop
Gene family MIPF0000015; MIR399
Literature search

4 open access papers mention ptc-MIR399a
(10 sentences)

Stem-loop 
   gcaau    a c      uua             u   -c   caacg   gca     uc 
5'      aauu c gggcaa   cucuuuuggcagc ggc  acu     gcg   gguga  a
        |||| | ||||||   ||||||||||||| |||  |||     |||   |||||   
3'      uuaa g cccguu   gaggaaaccgucg ucg  uga     cgu   ccacu  a
   -cuac    c c      -ua             c   aa   acaaa   -aa     ua
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000340.2: 4598194-4598313 [-]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR399a
ptc-MIR399fCM000340.2: 4599656-4599756 [+]
ptc-MIR399aCM000340.2: 4598194-4598313 [-]
Database links

Mature sequence ptc-miR399a

Accession MIMAT0002044
Sequence

91 -  

ugccaaaggagauuugccccg

 - 111

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Evidence by similarity; MI0001025

References

1
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).