Stem-loop sequence ptc-MIR399g

Accession

MI0002344 (change log)

Description

Populus trichocarpa miR399g stem-loop

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention ptc-MIR399g
(9 sentences)

Stem-loop

   uga     aa u u                  -a  uaua   c  u 
5'    ugaau  c g gcaauucuccuuuggcag  cg    ugg gu c
      |||||  | | ||||||||||||||||||  ||    ||| ||  
3'    acuua  g c cguuaagaggaaaccguc  gu    acc ca g
   -ca     cc u c                  ag  uuca   a  g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000340.2: 4640161-4640254 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR399g

• ptc-MIR399c: CM000340.2: 4642730-4642823 [+]
• ptc-MIR399g: CM000340.2: 4640161-4640254 [-]
• ptc-MIR399b: CM000340.2: 4636054-4636179 [+]
• ptc-MIR399d: CM000340.2: 4632342-4632455 [-]

Database links

• miRBase Tracker:MI0002344

Mature sequence ptc-miR399g

• Accession: MIMAT0002050
• Sequence: 65 - ugccaaaggagaauugcccug - 85
• Evidence: by similarity; MI0001023

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).