Stem-loop sequence ptc-MIR399g

AccessionMI0002344 (change log)
DescriptionPopulus trichocarpa miR399g stem-loop
Gene family MIPF0000015; MIR399
Literature search

4 open access papers mention ptc-MIR399g
(9 sentences)

   uga     aa u u                  -a  uaua   c  u 
5'    ugaau  c g gcaauucuccuuuggcag  cg    ugg gu c
      |||||  | | ||||||||||||||||||  ||    ||| ||  
3'    acuua  g c cguuaagaggaaaccguc  gu    acc ca g
   -ca     cc u c                  ag  uuca   a  g 
Get sequence
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000340.2: 4640161-4640254 [-]
Clustered miRNAs
< 10kb from ptc-MIR399g
ptc-MIR399cCM000340.2: 4642730-4642823 [+]
ptc-MIR399gCM000340.2: 4640161-4640254 [-]
ptc-MIR399bCM000340.2: 4636054-4636179 [+]
ptc-MIR399dCM000340.2: 4632342-4632455 [-]
Database links

Mature sequence ptc-miR399g

Accession MIMAT0002050

65 - 


 - 85

Get sequence
Evidence by similarity; MI0001023


"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D (2005).
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).