Stem-loop sequence ptc-MIR475c

Accession

MI0002363 (change log)

Description

Populus trichocarpa miR475c stem-loop

Gene family

MIPF0000145; MIR475

Literature search

2 open access papers mention ptc-MIR475c
(10 sentences)

Stem-loop

   u   a      a      c         a  -      uccau        aacucucuu    g 
5'  aac ucuuga caaugg cauuguaag gu aagugg     gagucaau         ugca a
    ||| |||||| |||||| ||||||||| || ||||||     ||||||||         ||||  
3'  uug agaauu guuacc guaacauuc ca uuuauc     cucaguua         acgu a
   -   g      a      u         c  c      -----        cgaaacagu    a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000346.2: 12908656-12908780 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0002363

Mature sequence ptc-miR475c

• Accession: MIMAT0002069
• Sequence: 100 - uuacaauguccauugauuaag - 120
• Evidence: by similarity; MI0002361

References

1. PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).