Stem-loop sequence ptc-MIR482a

Accession

MI0002397 (change log)

Previous IDs

ptc-MIR482

Description

Populus trichocarpa miR482a stem-loop

Gene family

MIPF0000403; MIR482

Literature search

8 open access papers mention ptc-MIR482a
(133 sentences)

Stem-loop

        c   c    cuu     a      -    u           ----       
5' gaguc uag aagu   uggag ugggag agua gcaagaaggaa    aaauuc 
   ||||| ||| ||||   ||||| |||||| |||| |||||||||||    ||||| a
3' cucag guc uucg   accuu acccuc ucau cguucuuccuu    uuuagu 
        c   u    ucu     -      c    c           auaa       

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000344.2: 8028049-8028155 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR482a

• ptc-MIR482a: CM000344.2: 8028049-8028155 [+]
• ptc-MIR1448: CM000344.2: 8028236-8028320 [+]

Database links

• RNAcentral:URS00007A0D55_3694
• miRBase Tracker:MI0002397

Mature sequence ptc-miR482a.2

• Accession: MIMAT0006785
• Previous IDs: ptc-miR482.2
• Sequence: 68 - ucuugccuacuccucccauu - 87
• Evidence: experimental; cloned [2]

Mature sequence ptc-miR482a.1

• Accession: MIMAT0002103
• Previous IDs: ptc-miR482;ptc-miR482.1
• Sequence: 73 - ccuacuccucccauucc - 89
• Evidence: experimental; cloned [1], PCR [1]

References

1. PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2. PMID:18363789 "Stress-responsive microRNAs in Populus" Lu S, Sun YH, Chiang VL Plant J. 55:131-151(2008).