miRBase entry: ssc-mir-148a

Stem-loop ssc-mir-148a


Accession
MI0002418
Description
Sus scrofa ssc-mir-148a precursor miRNA
Gene family
MIPF0000056; mir-148

Literature search
27 open access papers mention ssc-mir-148a
(94 sentences)

Sequence

3082 reads, 1113 reads per million, 15 experiments
gaggcAAAGUUCUGAGACACUCCGACUcugaauaugauagaagUCAGUGCACUACAGAACUUUGUcuc
((((((((((((((((.((((..(((((((.......))).))))))))..)).))))))))))))))

Structure
              -  -A    CC    -   aa 
gaggcAAAGUUCUG AG  CACU  GACU cug  u
|||||||||||||| ||  ||||  |||| |||  a
cucUGUUUCAAGAC UC  GUGA  CUga gau  u
              A  AC    --    a   ag 


Annotation confidence High
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Genome context
chr18: 51216035-51216102 [+]

Database links

Mature ssc-miR-148a-3p

Accession MIMAT0002124
Description Sus scrofa ssc-miR-148a-3p mature miRNA
Sequence 44 - UCAGUGCACUACAGAACUUUGU - 65
Evidence experimental
Illumina [2,4-5], cloned [3]

Mature ssc-miR-148a-5p

Accession MIMAT0022920
Description Sus scrofa ssc-miR-148a-5p mature miRNA
Sequence 6 - AAAGUUCUGAGACACUCCGACU - 27
Evidence experimental
Illumina [4]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100