miRBase entry: ssc-mir-184

Stem-loop ssc-mir-184


Accession
MI0002421
Description
Sus scrofa ssc-mir-184 precursor miRNA
Gene family
MIPF0000059; mir-184

Literature search
5 open access papers mention ssc-mir-184
(7 sentences)

Sequence

ccagucacauccccuuaucacuuuuccagccagcuuugugacucuaaauguUGGACGGAGAACUGAUAAGGGUaggugauuga
.(((((((...(((((((((.((((((..(((((((((......)))).)))))..)))))).)))))))))...))))))).

Structure
c       auc         c      ag     -    ug 
 cagucac   cccuuauca uuuucc  ccagc uuug  a
 |||||||   ||||||||| ||||||  ||||| ||||   
 guuagug   GGGAAUAGU AAGAGG  GGUug aaau  c
a       gaU         C      CA     u    cu 


Annotation confidence Not enough data
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Genome context
chr7: 53883626-53883708 [+]

Database links

Mature ssc-miR-184

Accession MIMAT0002127
Description Sus scrofa ssc-miR-184 mature miRNA
Sequence 52 - UGGACGGAGAACUGAUAAGGGU - 73
Evidence experimental
454 [2], Illumina [3-5]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  3. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100