miRBase entry: ssc-mir-20a

Stem-loop ssc-mir-20a


Accession
MI0002423
Description
Sus scrofa ssc-mir-20a precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
15 open access papers mention ssc-mir-20a
(33 sentences)

Sequence

2401 reads, 736 reads per million, 11 experiments
guagcacUAAAGUGCUUAUAGUGCAGGUAguguuuaguuaucuACUGCAUUAUGAGCACUUAAAGUacugc
((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).))))

Structure
    c   -A                 G   uguu 
guag acU  AAGUGCUUAUAGUGCAG UAg    u
|||| |||  ||||||||||||||||| |||    a
cguc UGA  UUCACGAGUAUUACGUC Auc    g
    a   AA                 -   uauu 


Annotation confidence Not enough data
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Genome context
chr11: 66610513-66610583 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ssc-mir-20a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-20a-5p

Accession MIMAT0002129
Description Sus scrofa ssc-miR-20a-5p mature miRNA
Sequence 8 - UAAAGUGCUUAUAGUGCAGGUA - 29
Evidence experimental
Illumina [2,4], cloned [3]

Mature ssc-miR-20a-3p

Accession MIMAT0037316
Description Sus scrofa ssc-miR-20a-3p mature miRNA
Sequence 44 - ACUGCAUUAUGAGCACUUAAAGU - 66
Evidence experimental
Illumina [5]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 25230983
    The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
    "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
    "J Appl Genet (2015) 56:239-252