miRBase entry: ssc-mir-28

Stem-loop ssc-mir-28


Accession
MI0002430
Description
Sus scrofa ssc-mir-28 precursor miRNA
Gene family
MIPF0000057; mir-28

Literature search
8 open access papers mention ssc-mir-28
(14 sentences)

Sequence

158 reads, 121 reads per million, 12 experiments
gguccuugcccucAAGGAGCUCACAGUCUAUUGAGuugccuuucugucuucccCACUAGAUUGUGAGCUCCUGGAgggcaggcacu
(((.(((((((((.((((((((((((((((.((....................)).)))))))))))))))).))))))))).)))

Structure
   c         A                U  AGuugccuu 
ggu cuugcccuc AGGAGCUCACAGUCUA UG         u
||| ||||||||| |||||||||||||||| ||          
uca ggacgggAG UCCUCGAGUGUUAGAU AC         c
   c         G                C  cccuucugu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr13: 135461289-135461374 [+]

Database links

Mature ssc-miR-28-5p

Accession MIMAT0002136
Description Sus scrofa ssc-miR-28-5p mature miRNA
Sequence 14 - AAGGAGCUCACAGUCUAUUGAG - 35
Evidence experimental
Illumina [2-3]

Mature ssc-miR-28-3p

Accession MIMAT0015211
Description Sus scrofa ssc-miR-28-3p mature miRNA
Sequence 54 - CACUAGAUUGUGAGCUCCUGGA - 75
Evidence experimental
Illumina [2-4]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100