Stem-loop ssc-mir-28

Accession

MI0002430

Description

Sus scrofa ssc-mir-28 precursor miRNA

Literature search

8 open access papers mention ssc-mir-28
(14 sentences)

Sequence

137 reads, 38 reads per million, 12 experiments

gguccuugcccucAAGGAGCUCACAGUCUAUUGAGuugccuuucugucuucccCACUAGAUUGUGAGCUCCUGGAgggcaggcacu
(((.(((((((((.((((((((((((((((.((....................)).)))))))))))))))).))))))))).)))

Structure

   c         A                U  AGuugccuu 
ggu cuugcccuc AGGAGCUCACAGUCUA UG         u
||| ||||||||| |||||||||||||||| ||          
uca ggacgggAG UCCUCGAGUGUUAGAU AC         c
   c         G                C  cccuucugu 

Annotation confidence Medium

Genome context

chr13: 135461289-135461374 [+]

Mature ssc-miR-28-5p

• Accession: MIMAT0002136
• Description: Sus scrofa ssc-miR-28-5p mature miRNA
• Sequence: 14 - AAGGAGCUCACAGUCUAUUGAG - 35
• Evidence: experimental ; Illumina [2-3]

Mature ssc-miR-28-3p

• Accession: MIMAT0015211
• Description: Sus scrofa ssc-miR-28-3p mature miRNA
• Sequence: 54 - CACUAGAUUGUGAGCUCCUGGA - 75
• Evidence: experimental ; Illumina [2-4]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100