miRBase entry: ssc-mir-7-2

Stem-loop ssc-mir-7-2


Accession
MI0002435
Description
Sus scrofa ssc-mir-7-2 precursor miRNA
Gene family
MIPF0000022; mir-7

Literature search
12 open access papers mention ssc-mir-7-2
(22 sentences)

Sequence

351 reads, 168 reads per million, 14 experiments
uggauguuggucuaguucugugUGGAAGACUAGUGAUUUUGUUGUUuuuagauaacuaaaucgaCAACAAAUCACAGUCUGCCAUAuggcacaggccaugccucuacag
((((.((((((((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).)))))))).)).))))...

Structure
---    u  -      a  u        A     A       U      --     a 
   ugga gu uggucu gu cugugUGG AGACU GUGAUUU GUUGUU  uuuag u
   |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu cg accgga ca gguAUACC UCUGA CACUAAA CAACag  aaauc a
gac    c  u      -  c        G     -       -      cu     a 


Annotation confidence Not enough data
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Genome context
chr10: 35113341-35113449 [+]

Database links

Mature ssc-miR-7-5p

Accession MIMAT0002141
Description Sus scrofa ssc-miR-7-5p mature miRNA
Sequence 23 - UGGAAGACUAGUGAUUUUGUUGUU - 46
Evidence experimental
Illumina [1-2]

Mature ssc-miR-7-3p

Accession MIMAT0037317
Description Sus scrofa ssc-miR-7-3p mature miRNA
Sequence 65 - CAACAAAUCACAGUCUGCCAUA - 86
Evidence experimental
Illumina [4]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100

  4. PubMed ID: 25230983
    The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
    "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
    "J Appl Genet (2015) 56:239-252