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miRBase |
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Stem-loop sequence ssc-mir-7-2 |
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Accession | MI0002435 (change log) | ||||
Previous IDs | ssc-mir-7 | ||||
Description | Sus scrofa miR-7-2 stem-loop | ||||
Gene family | MIPF0000022; mir-7 | ||||
Literature search |
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12 open access papers mention ssc-mir-7-2 | ||||
Stem-loop |
--- u - a u a a u -- a 5' ugga gu uggucu gu cugugugg agacu gugauuu guuguu uuuag u |||| || |||||| || |||||||| ||||| ||||||| |||||| ||||| 3' aucu cg accgga ca gguauacc ucuga cacuaaa caacag aaauc a gac c u - c g - - cu a |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
Mature sequence ssc-miR-7-5p |
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Accession | MIMAT0002141 |
Sequence |
23 - uggaagacuagugauuuuguuguu - 46 |
Deep sequencing | 4545 reads, 15 experiments |
Evidence | experimental; Illumina [1-2] |
Mature sequence ssc-miR-7-3p |
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Accession | MIMAT0037317 |
Sequence |
65 - caacaaaucacagucugccaua - 86 |
Deep sequencing | 38 reads, 13 experiments |
Evidence | experimental; Illumina [4] |
References |
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1 |
PMID:15885146
"Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing"
BMC Genomics. 6:70(2005).
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2 |
PMID:19917043
"MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
Anim Genet. 41:159-168(2010).
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3 |
PMID:24499489
"Exploration of microRNAs in porcine milk exosomes"
BMC Genomics. 15:100(2014).
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4 |
PMID:25230983
"The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing"
J Appl Genet. 56:239-252(2015).
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