miRBase entry: ssc-mir-140

Stem-loop ssc-mir-140


Accession
MI0002437
Description
Sus scrofa ssc-mir-140 precursor miRNA
Gene family
MIPF0000085; mir-140

Literature search
16 open access papers mention ssc-mir-140
(35 sentences)

Sequence

966 reads, 401 reads per million, 12 experiments
ccugccAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucUACCACAGGGUAGAACCACGGACagg
((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))))).))))

Structure
    -  A             A       u  c  c 
ccug cc GUGGUUUUACCCU UGGUAGg ua gu  
|||| || ||||||||||||| ||||||| || || a
ggaC GG CACCAAGAUGGGA ACCAUcu gu cg  
    A  -             C       u  -  u 


Annotation confidence High
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Genome context
chrUScaf726: 107288-107357 [+]

Database links

Mature ssc-miR-140-5p

Accession MIMAT0002143
Description Sus scrofa ssc-miR-140-5p mature miRNA
Sequence 7 - AGUGGUUUUACCCUAUGGUAG - 27
Evidence experimental
cloned [2], Illumina [3]

Mature ssc-miR-140-3p

Accession MIMAT0006786
Description Sus scrofa ssc-miR-140-3p mature miRNA
Sequence 45 - UACCACAGGGUAGAACCACGGAC - 67
Evidence experimental
cloned [2], Illumina [3-4]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 18548309
    Identification and characterization of new microRNAs from pig
    "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
    "Mamm Genome (2008) 19:570-580

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100