miRBase entry: ssc-mir-103-1

Stem-loop ssc-mir-103-1


Accession
MI0002448
Description
Sus scrofa ssc-mir-103-1 precursor miRNA
Gene family
MIPF0000024; mir-103

Literature search
24 open access papers mention ssc-mir-103-1
(67 sentences)

Sequence

2043 reads, 652 reads per million, 11 experiments
cuuacugcccucggcuucuuuacagugcugccuuguugcauauggaucaAGCAGCAUUGUACAGGGCUAUGAaggcacugag
((((.((((.((((((.((.(((((((((((.(((.(.(....).).)))))))))))))).))))))..)).)))).))))

Structure
    c    c  --    u  u           c   u g a 
cuua ugcc uc  ggcu cu uacagugcugc uug u c u
|||| |||| ||  |||| || ||||||||||| ||| | |  
gagu acgg AG  UCGG GA AUGUUACGACG Aac a g a
    c    a  UA    -  C           -   u g u 


Annotation confidence Not enough data
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Genome context
chr16: 59912617-59912698 [+]

Database links

Mature ssc-miR-103

Accession MIMAT0002154
Description Sus scrofa ssc-miR-103 mature miRNA
Sequence 50 - AGCAGCAUUGUACAGGGCUAUGA - 72
Evidence experimental
Illumina [1,3-4], cloned [2]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100