miRBase entry: ssc-mir-107

Stem-loop ssc-mir-107


Accession
MI0002449
Description
Sus scrofa ssc-mir-107 precursor miRNA
Gene family
MIPF0000024; mir-103

Literature search
11 open access papers mention ssc-mir-107
(33 sentences)

Sequence

126 reads, 81 reads per million, 10 experiments
uucucucugcuuucagcuucuuuacaguguugccuuguggcauggaguucaAGCAGCAUUGUACAGGGCUAUCAaagcacagagagc
((((((.((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...)))))).)))))).

Structure
-      c      --c    u  u           c   u   a 
 uucucu ugcuuu   agcu cu uacaguguugc uug ggc u
 |||||| ||||||   |||| || ||||||||||| ||| ||| g
 gagaga acgaaA   UCGG GA AUGUUACGACG Aac uug g
c      c      CUA    -  C           -   -   a 


Annotation confidence Not enough data
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Genome context
chr14: 110407095-110407181 [-]

Database links

Mature ssc-miR-107

Accession MIMAT0002155
Description Sus scrofa ssc-miR-107 mature miRNA
Sequence 52 - AGCAGCAUUGUACAGGGCUAUCA - 74
Evidence experimental
cloned [2], 454 [3], Illumina [4-6]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  3. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  4. PubMed ID: 18548309
    Identification and characterization of new microRNAs from pig
    "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
    "Mamm Genome (2008) 19:570-580

  5. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  6. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100