miRBase entry: ssc-mir-136

Stem-loop ssc-mir-136


Accession
MI0002452
Description
Sus scrofa ssc-mir-136 precursor miRNA
Gene family
MIPF0000099; mir-136

Literature search
7 open access papers mention ssc-mir-136
(26 sentences)

Sequence

17 reads, 22 reads per million, 7 experiments
ugagcccucggaggACUCCAUUUGUUUUGAUGAUGGAuucuuacgcucCAUCAUCGUCUCAAAUGAGUCUucagaggguucu
.((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).)))))))).

Structure
u        g        C     UUU          uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag cuUCUGAG UAAAC   GCUACUACcu   a
u        a        -     UCU          cgc 


Annotation confidence Not enough data
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Genome context
chr7: 132079194-132079275 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-mir-136
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-136-5p

Accession MIMAT0002158
Description Sus scrofa ssc-miR-136-5p mature miRNA
Sequence 15 - ACUCCAUUUGUUUUGAUGAUGGA - 37
Evidence experimental
Illumina [2-3]

Mature ssc-miR-136-3p

Accession MIMAT0037320
Description Sus scrofa ssc-miR-136-3p mature miRNA
Sequence 49 - CAUCAUCGUCUCAAAUGAGUCU - 70
Evidence experimental
Illumina [4]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 25230983
    The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
    "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
    "J Appl Genet (2015) 56:239-252