miRBase entry: ssc-mir-139

Stem-loop ssc-mir-139


Accession
MI0002453
Description
Sus scrofa ssc-mir-139 precursor miRNA
Gene family
MIPF0000117; mir-139

Literature search
5 open access papers mention ssc-mir-139
(25 sentences)

Sequence

52 reads, 51 reads per million, 10 experiments
guguauUCUACAGUGCACGUGUCUCCAGuguggcucggaggcUGGAGACGCGGCCCUGUUGGAGUaac
...((((((((((.((.((((((((((((.(.......).)))))))))))))).))).)))))))..

Structure
gug       -   U  A            g gg 
   uauUCUA CAG GC CGUGUCUCCAGu u  c
   ||||||| ||| || |||||||||||| |  u
   aUGAGGU GUC CG GCGCAGAGGUcg a  c
-ca       U   C  -            g gg 


Annotation confidence Not enough data
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Genome context
chr9: 7935635-7935702 [-]

Database links

Mature ssc-miR-139-5p

Accession MIMAT0002159
Description Sus scrofa ssc-miR-139-5p mature miRNA
Sequence 7 - UCUACAGUGCACGUGUCUCCAG - 28
Evidence experimental
Illumina [2,4-5], cloned [3]

Mature ssc-miR-139-3p

Accession MIMAT0022921
Description Sus scrofa ssc-miR-139-3p mature miRNA
Sequence 43 - UGGAGACGCGGCCCUGUUGGAGU - 65
Evidence experimental
Illumina [4]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100