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miRBase |
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Stem-loop sequence ssc-mir-186 |
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Accession | MI0002456 (change log) | ||||
Description | Sus scrofa miR-186 stem-loop | ||||
Gene family | MIPF0000109; mir-186 | ||||
Literature search |
5 open access papers mention ssc-mir-186 | ||||
Stem-loop |
ugcuuau u u uau uu 5' aacuuuccaaagaauuc ccuuu gggcuu ga u ||||||||||||||||| ||||| |||||| || 3' uugaaggguuuuuuaag ggaaa cccgaa uu u -----gu u - --u ua |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
Mature sequence ssc-miR-186-5p |
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Accession | MIMAT0002162 |
Sequence |
15 - caaagaauucuccuuuugggcuu - 37 |
Deep sequencing | 7779 reads, 15 experiments |
Evidence | experimental; Illumina [2-4] |
Mature sequence ssc-miR-186-3p |
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Accession | MIMAT0037321 |
Sequence |
54 - gcccaaaggugaauuuuuuggg - 75 |
Deep sequencing | 7 reads, 5 experiments |
Evidence | experimental; Illumina [5] |
References |
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1 |
PMID:15885146
"Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing"
BMC Genomics. 6:70(2005).
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2 |
PMID:19917043
"MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
Anim Genet. 41:159-168(2010).
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3 |
PMID:21312241
"MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing"
J Cell Biochem. 112:1318-1328(2011).
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4 |
PMID:24499489
"Exploration of microRNAs in porcine milk exosomes"
BMC Genomics. 15:100(2014).
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5 |
PMID:25230983
"The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing"
J Appl Genet. 56:239-252(2015).
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