miRBase entry: ssc-mir-30c-2

Stem-loop ssc-mir-30c-2


Accession
MI0002461
Description
Sus scrofa ssc-mir-30c-2 precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
17 open access papers mention ssc-mir-30c-2
(34 sentences)

Sequence

838 reads, 343 reads per million, 13 experiments
gacagauacUGUAAACAUCCUACACUCUCAGCuguggaaaguaagaaagCUGGGAGAAGGCUGUUUACUCUcucugccuu
..((((....(((((((.(((...(((((((((..............))))))))).))).)))))))....))))....

Structure
--ga    uacU       U   ACA         guggaa 
    caga    GUAAACA CCU   CUCUCAGCu      a
    ||||    ||||||| |||   |||||||||       
    gucu    CAUUUGU GGA   GAGGGUCga      g
uucc    cUCU       C   --A         aagaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 57721688-57721767 [-]

Database links

Mature ssc-miR-30c-5p

Accession MIMAT0002167
Description Sus scrofa ssc-miR-30c-5p mature miRNA
Sequence 10 - UGUAAACAUCCUACACUCUCAGC - 32
Evidence experimental
cloned [1], Illumina [2-3]

Mature ssc-miR-30c-3p

Accession MIMAT0022922
Description Sus scrofa ssc-miR-30c-3p mature miRNA
Sequence 50 - CUGGGAGAAGGCUGUUUACUCU - 71
Evidence experimental
Illumina [5]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  3. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  4. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  5. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  6. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100