Stem-loop osa-MIR528

Accession

MI0003201

Description

Oryza sativa osa-MIR528 precursor miRNA

Gene family

MIPF0000868; MIR528

Literature search

38 open access papers mention osa-MIR528
(198 sentences)

Sequence

6706 reads, 4611 reads per million, 2 experiments

agUGGAAGGGGCAUGCAGAGGAGcaggagauucaguuugaagcuggacuucacuuuugccucucucuCCUGUGCUUGCCUCUUCCAUU
.((((((((((((.(((.(((((..(((((..(((..(((((.....)))))...)))..)))))))))).))).)))))))))))).

Structure

a            U   G     ca     uu   -uu     c 
 gUGGAAGGGGCA GCA AGGAG  ggaga  cag   ugaag u
 |||||||||||| ||| |||||  |||||  |||   ||||| g
 UACCUUCUCCGU CGU UCCuc  ucucu  guu   acuuc g
U            U   G     --     cc   uuc     a 

Annotation confidence Not enough data

Genome context

Chr3: 1667328-1667415 [+]

Mature osa-miR528-5p

• Accession: MIMAT0002884
• Description: Oryza sativa osa-miR528-5p mature miRNA
• Sequence: 3 - UGGAAGGGGCAUGCAGAGGAG - 23
• Evidence: experimental ; Northern [1]

Mature osa-miR528-3p

• Accession: MIMAT0022926
• Description: Oryza sativa osa-miR528-3p mature miRNA
• Sequence: 68 - CCUGUGCUUGCCUCUUCCAUU - 88
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 16126864
   Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice
   "Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X"
   "Plant Physiol (2005) 139:296-305


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176