Stem-loop sequence osa-MIR528

Accession

MI0003201 (change log)

Description

Oryza sativa miR528 stem-loop

Gene family

MIPF0000868; MIR528

Literature search

38 open access papers mention osa-MIR528
(197 sentences)

Stem-loop

                u   g     ca     uu   -uu     c 
5' aguggaaggggca gca aggag  ggaga  cag   ugaag u
   ||||||||||||| ||| |||||  |||||  |||   ||||| g
3' uuaccuucuccgu cgu uccuc  ucucu  guu   acuuc g
                u   g     --     cc   uuc     a 

Deep sequencing

7015 reads, 4.55e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr3: 1667328-1667415 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0003201

Mature sequence osa-miR528-5p

• Accession: MIMAT0002884
• Previous IDs: osa-miR528
• Sequence: 3 - uggaaggggcaugcagaggag - 23
• Deep sequencing: 7013 reads, 2 experiments
• Evidence: experimental; Northern [1]
• Database links:
  • RNAcentral:URS0000134380_39947

Mature sequence osa-miR528-3p

• Accession: MIMAT0022926
• Sequence: 68 - ccugugcuugccucuuccauu - 88
• Deep sequencing: 2 reads, 1 experiments
• Evidence: experimental; Illumina [2]

References

1. PMID:16126864 "Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice" Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X Plant Physiol. 139:296-305(2005).
2. PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).