Stem-loop rno-mir-489

Accession

MI0003477

Description

Rattus norvegicus rno-mir-489 precursor miRNA

Gene family

MIPF0000111; mir-489

Literature search

5 open access papers mention rno-mir-489
(17 sentences)

Sequence

7736 reads, 30 reads per million, 254 experiments

acugcuacaguggcagcuugguUGUCGUAUGCGUGAUGACACGUUCucguguauuccagaAUGACAUCACAUAUAUGGCAGCuaaacuguuacaggaacaacaagu
.........(((((((.((((((((((((((.((((((...((((((.(......).)))))).)))))).)))))))))))))).))))))).............

Structure

----acugcuaca       c              C      ACA      c ug 
             guggcag uugguUGUCGUAUG GUGAUG   CGUUCu g  u
             ||||||| |||||||||||||| ||||||   |||||| |   
             cauuguc aauCGACGGUAUAU CACUAC   GUAaga c  a
ugaacaacaagga       a              A      --A      c uu 

Annotation confidence High

Genome context

chr4: 28659523-28659628 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-489

Mature rno-miR-489-5p

• Accession: MIMAT0017196
• Description: Rattus norvegicus rno-miR-489-5p mature miRNA
• Sequence: 23 - UGUCGUAUGCGUGAUGACACGUUC - 46
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-489-3p

• Accession: MIMAT0003113
• Description: Rattus norvegicus rno-miR-489-3p mature miRNA
• Sequence: 61 - AUGACAUCACAUAUAUGGCAGC - 82
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267